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@fmi-faim

FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

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  1. fmi-ij2-plugins fmi-ij2-plugins Public

    A collection of ImageJ2 plugins for use with KNIME

    Java 8 3

  2. visiview-scripts visiview-scripts Public

    A collection of macros for the VisiView acquisition software

    Python 1 1

  3. imagej-scripts imagej-scripts Public

    Python 1

Repositories

Showing 10 of 75 repositories
  • faim-ipa Public

    A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

    fmi-faim/faim-ipa's past year of commit activity
    Python 20 BSD-3-Clause 9 20 7 Updated Oct 26, 2026
  • napari-save-transformed Public

    Save image layers with their transformation applied

    fmi-faim/napari-save-transformed's past year of commit activity
    Python 3 BSD-3-Clause 0 1 1 Updated Oct 26, 2026
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    fmi-faim/staged-recipes's past year of commit activity
    Python 0 BSD-3-Clause 6,502 0 0 Updated Oct 26, 2026
  • faim-fractal-converters Public
    fmi-faim/faim-fractal-converters's past year of commit activity
    Python 0 BSD-3-Clause 0 4 0 Updated Oct 22, 2026
  • faim-scripts Public
    fmi-faim/faim-scripts's past year of commit activity
    Python 0 0 0 0 Updated Oct 21, 2026
  • faim-wako-searchfirst Public

    Python scripts for the SearchFirst option in Wako Software Suite

    fmi-faim/faim-wako-searchfirst's past year of commit activity
    Python 3 MIT 1 9 3 Updated Oct 6, 2026
  • ipa-project-template Public

    Copier template for image processing & analysis projects.

    fmi-faim/ipa-project-template's past year of commit activity
    Jinja 7 MIT 3 6 (1 issue needs help) 1 Updated Oct 5, 2026
  • example-project Public
    fmi-faim/example-project's past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 1 Updated Oct 5, 2026
  • fractal-hcs-qc Public

    Fractal task to consolidate measurement tables in HCS plate zarrs

    fmi-faim/fractal-hcs-qc's past year of commit activity
    Python 0 BSD-3-Clause 0 7 1 Updated Oct 1, 2026
  • metamorph-mda-parser Public

    Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.

    fmi-faim/metamorph-mda-parser's past year of commit activity
    Python 0 BSD-3-Clause 0 3 0 Updated Sep 21, 2026
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